Package qupath.imagej.detect.cells
Class SubcellularDetection
java.lang.Object
qupath.lib.plugins.AbstractPlugin<BufferedImage>
qupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
qupath.imagej.detect.cells.SubcellularDetection
- All Implemented Interfaces:
qupath.lib.plugins.PathInteractivePlugin<BufferedImage>,qupath.lib.plugins.PathPlugin<BufferedImage>
public class SubcellularDetection
extends qupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
Experimental plugin to help with the quantification of subcellular structures.
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Field Summary
Fields inherited from class qupath.lib.plugins.AbstractInteractivePlugin
params -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionprotected voidaddRunnableTasks(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.objects.PathObject parentObject, List<Runnable> tasks) qupath.lib.plugins.parameters.ParameterListgetDefaultParameterList(qupath.lib.images.ImageData<BufferedImage> imageData) getName()protected Collection<qupath.lib.objects.PathObject> getParentObjects(qupath.lib.images.ImageData<BufferedImage> imageData) Collection<Class<? extends qupath.lib.objects.PathObject>> booleanrunPlugin(qupath.lib.plugins.TaskRunner taskRunner, qupath.lib.images.ImageData<BufferedImage> imageData, String arg) Methods inherited from class qupath.lib.plugins.AbstractInteractivePlugin
alwaysPromptForObjects, getLoggableParameters, getParameterList, parseArgumentMethods inherited from class qupath.lib.plugins.AbstractPlugin
addWorkflowStep, getTasks, postprocess, preprocess, rearrangeByStride, requestHierarchyUpdate
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Constructor Details
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SubcellularDetection
public SubcellularDetection()
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Method Details
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runPlugin
public boolean runPlugin(qupath.lib.plugins.TaskRunner taskRunner, qupath.lib.images.ImageData<BufferedImage> imageData, String arg) - Specified by:
runPluginin interfacequpath.lib.plugins.PathPlugin<BufferedImage>- Overrides:
runPluginin classqupath.lib.plugins.AbstractPlugin<BufferedImage>
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addRunnableTasks
protected void addRunnableTasks(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.objects.PathObject parentObject, List<Runnable> tasks) - Specified by:
addRunnableTasksin classqupath.lib.plugins.AbstractPlugin<BufferedImage>
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getDefaultParameterList
public qupath.lib.plugins.parameters.ParameterList getDefaultParameterList(qupath.lib.images.ImageData<BufferedImage> imageData) - Specified by:
getDefaultParameterListin interfacequpath.lib.plugins.PathInteractivePlugin<BufferedImage>- Specified by:
getDefaultParameterListin classqupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
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getName
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getLastResultsDescription
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getDescription
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getParentObjects
protected Collection<qupath.lib.objects.PathObject> getParentObjects(qupath.lib.images.ImageData<BufferedImage> imageData) - Specified by:
getParentObjectsin classqupath.lib.plugins.AbstractPlugin<BufferedImage>
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getSupportedParentObjectClasses
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