Package qupath.imagej.detect.tissue
Class PositivePixelCounterIJ
java.lang.Object
qupath.lib.plugins.AbstractPlugin<BufferedImage>
qupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
qupath.lib.plugins.AbstractDetectionPlugin<BufferedImage>
qupath.imagej.detect.tissue.PositivePixelCounterIJ
- All Implemented Interfaces:
qupath.lib.plugins.PathInteractivePlugin<BufferedImage>,qupath.lib.plugins.PathPlugin<BufferedImage>
public class PositivePixelCounterIJ
extends qupath.lib.plugins.AbstractDetectionPlugin<BufferedImage>
Simple command to detect regions with positive staining.
For versions <= v0.1.2 this gave simple measurements that were influenced by the downsample values used. Later versions make calibrated measurements and give more flexibility in terms of output.
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Field Summary
Fields inherited from class qupath.lib.plugins.AbstractInteractivePlugin
params -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionprotected voidaddRunnableTasks(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.objects.PathObject parentObject, List<Runnable> tasks) qupath.lib.plugins.parameters.ParameterListgetDefaultParameterList(qupath.lib.images.ImageData<BufferedImage> imageData) getName()Methods inherited from class qupath.lib.plugins.AbstractDetectionPlugin
getParentObjects, getSupportedParentObjectClassesMethods inherited from class qupath.lib.plugins.AbstractInteractivePlugin
alwaysPromptForObjects, getLoggableParameters, getParameterList, parseArgumentMethods inherited from class qupath.lib.plugins.AbstractPlugin
addWorkflowStep, getTasks, postprocess, preprocess, rearrangeByStride, requestHierarchyUpdate, runPluginMethods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitMethods inherited from interface qupath.lib.plugins.PathPlugin
runPlugin
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Constructor Details
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PositivePixelCounterIJ
public PositivePixelCounterIJ()
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Method Details
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getDefaultParameterList
public qupath.lib.plugins.parameters.ParameterList getDefaultParameterList(qupath.lib.images.ImageData<BufferedImage> imageData) - Specified by:
getDefaultParameterListin interfacequpath.lib.plugins.PathInteractivePlugin<BufferedImage>- Specified by:
getDefaultParameterListin classqupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
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getName
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getDescription
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getLastResultsDescription
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addRunnableTasks
protected void addRunnableTasks(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.objects.PathObject parentObject, List<Runnable> tasks) - Specified by:
addRunnableTasksin classqupath.lib.plugins.AbstractPlugin<BufferedImage>
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