Index

B C D G I M O P Q R T 
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

B

buildServer(URI, String...) - Method in class qupath.lib.images.servers.openslide.OpenslideServerBuilder
 

C

checkImageSupport(URI, String...) - Method in class qupath.lib.images.servers.openslide.OpenslideServerBuilder
 
close() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
Close; this is important for cleanup.
close() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
 
createID() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
 
createServerBuilder() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
 

D

detectVendor(String) - Static method in class qupath.lib.images.servers.openslide.jna.OpenSlideLoader
Try to detect the vendor of the image at the specified path.
dispose() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
Dispose the OpenSlide object; this is equivalent to OpenSlide.close().
dumpMetadata() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
Retrieve a JSON string representation of the properties, as stored as key-value pairs by OpenSlide.

G

getAssociatedImage(String) - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
Get a named associated image.
getAssociatedImage(String) - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
 
getAssociatedImageList() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
 
getAssociatedImages() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
Get a list of all associated image names.
getDescription() - Method in class qupath.ext.openslide.OpenSlideExtension
 
getDescription() - Method in class qupath.lib.images.servers.openslide.OpenslideServerBuilder
 
getICCProfileBytes() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
Request the bytes for an ICC profile.
getImageType() - Method in class qupath.lib.images.servers.openslide.OpenslideServerBuilder
 
getLevel0Height() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
Get the height of the full-resolution image (level 0).
getLevel0Width() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
Get the width of the full-resolution image (level 0).
getLevelCount() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
Get the total number of pyramid levels.
getLevelHeight(int) - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
Get the image height at the specified level.
getLevelWidth(int) - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
Get the image width at the specified level.
getLibraryVersion() - Static method in class qupath.lib.images.servers.openslide.jna.OpenSlideLoader
Get the version of the OpenSlide library.
getName() - Method in class qupath.ext.openslide.OpenSlideExtension
 
getName() - Method in class qupath.lib.images.servers.openslide.OpenslideServerBuilder
 
getOriginalMetadata() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
 
getProperties() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
Get an unmodifiable map of all available properties.
getServerType() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
 
getURIs() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
 

I

installExtension(QuPathGUI) - Method in class qupath.ext.openslide.OpenSlideExtension
 
isOpenSlideAvailable() - Static method in class qupath.lib.images.servers.openslide.jna.OpenSlideLoader
Query whether OpenSlide has already been loaded.

M

matchClassName(String...) - Method in class qupath.lib.images.servers.openslide.OpenslideServerBuilder
 

O

openImage(String) - Static method in class qupath.lib.images.servers.openslide.jna.OpenSlideLoader
Open an image using OpenSlide, returning an OpenSlide instance to access pixels and metadata.
OpenSlide - Class in qupath.lib.images.servers.openslide.jna
Minimal Java wrapper for OpenSlide.
openslide_close(long) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_detect_vendor(String) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_get_associated_image_dimensions(long, String, long[], long[]) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_get_associated_image_names(long) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_get_error(long) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_get_icc_profile_size(long) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_get_level_count(long) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_get_level_dimensions(long, int, long[], long[]) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_get_level_downsample(long, int) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_get_property_names(long) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_get_property_value(long, String) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_get_version() - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_open(String) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_read_associated_image(long, String, int[]) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_read_icc_profile(long, byte[]) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
openslide_read_region(long, int[], long, long, int, long, long) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
 
OpenSlide.OpenSlideDisposedException - Exception Class in qupath.lib.images.servers.openslide.jna
Exception thrown whenever a request is made after the OpenSlide object has been closed.
OpenSlideDisposedException() - Constructor for exception class qupath.lib.images.servers.openslide.jna.OpenSlide.OpenSlideDisposedException
 
OpenSlideExtension - Class in qupath.ext.openslide
 
OpenSlideExtension() - Constructor for class qupath.ext.openslide.OpenSlideExtension
 
OpenslideImageServer - Class in qupath.lib.images.servers.openslide
ImageServer implementation using OpenSlide.
OpenslideImageServer(URI, String...) - Constructor for class qupath.lib.images.servers.openslide.OpenslideImageServer
Create an ImageServer using OpenSlide for the specified file.
OpenSlideJNA - Interface in qupath.lib.images.servers.openslide.jna
JNA interface for OpenSlide.
OpenSlideLoader - Class in qupath.lib.images.servers.openslide.jna
Static helper class to manage loading the OpenSlide library.
OpenSlideLoader() - Constructor for class qupath.lib.images.servers.openslide.jna.OpenSlideLoader
 
openslidePathProperty - Static variable in class qupath.ext.openslide.OpenSlideExtension
 
OpenslideServerBuilder - Class in qupath.lib.images.servers.openslide
Builder for Openslide ImageServer.
OpenslideServerBuilder() - Constructor for class qupath.lib.images.servers.openslide.OpenslideServerBuilder
 

P

paintRegionARGB(int[], long, long, int, int, int) - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
 
PROPERTY_NAME_BACKGROUND_COLOR - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
 
PROPERTY_NAME_BOUNDS_HEIGHT - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
 
PROPERTY_NAME_BOUNDS_WIDTH - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
 
PROPERTY_NAME_BOUNDS_X - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
 
PROPERTY_NAME_BOUNDS_Y - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
 
PROPERTY_NAME_COMMENT - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
 
PROPERTY_NAME_MPP_X - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
 
PROPERTY_NAME_MPP_Y - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
 
PROPERTY_NAME_OBJECTIVE_POWER - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
 
PROPERTY_NAME_QUICKHASH1 - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
 
PROPERTY_NAME_VENDOR - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
 

Q

qupath.ext.openslide - package qupath.ext.openslide
 
qupath.lib.images.servers.openslide - package qupath.lib.images.servers.openslide
Read images using OpenSlide (https://openslide.org/).
qupath.lib.images.servers.openslide.jna - package qupath.lib.images.servers.openslide.jna
 

R

readTile(TileRequest) - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
 

T

tryToLoad(String...) - Static method in class qupath.lib.images.servers.openslide.jna.OpenSlideLoader
Try to load OpenSlide.
tryToLoadQuietly(String...) - Static method in class qupath.lib.images.servers.openslide.jna.OpenSlideLoader
Try to load OpenSlide, but don't throw an exception if it fails.
B C D G I M O P Q R T 
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form