Package qupathj
Class QuPath_Send_Overlay_to_QuPath
java.lang.Object
qupathj.QuPath_Send_Overlay_to_QuPath
- All Implemented Interfaces:
PlugIn
ImageJ plugin for sending back all the ROIs on an ImageJ overlay to QuPath.
Optionally measure the ROIs first, and include the measurements as features.
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionstatic List<qupath.lib.objects.PathObject> createObjectsFromROIs(ImagePlus imp, Collection<? extends Roi> rois, double downsample, boolean asDetection, boolean includeMeasurements, qupath.lib.regions.ImagePlane plane) Turn an array of ImageJ ROIs into a list of QuPath PathObjects, optionally adding measurements as well.static List<qupath.lib.objects.PathObject> createObjectsFromROIs(ImagePlus imp, Collection<? extends Roi> rois, double downsample, Function<qupath.lib.roi.interfaces.ROI, qupath.lib.objects.PathObject> creator, boolean includeMeasurements, qupath.lib.regions.ImagePlane plane) Turn an array of ImageJ ROIs into a list of QuPath PathObjects, optionally adding measurements as well.void
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Constructor Details
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QuPath_Send_Overlay_to_QuPath
public QuPath_Send_Overlay_to_QuPath()
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Method Details
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run
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createObjectsFromROIs
public static List<qupath.lib.objects.PathObject> createObjectsFromROIs(ImagePlus imp, Collection<? extends Roi> rois, double downsample, boolean asDetection, boolean includeMeasurements, qupath.lib.regions.ImagePlane plane) Turn an array of ImageJ ROIs into a list of QuPath PathObjects, optionally adding measurements as well.- Parameters:
imp-rois-downsample-asDetection-includeMeasurements-plane-- Returns:
- Since:
- v0.4.0
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createObjectsFromROIs
public static List<qupath.lib.objects.PathObject> createObjectsFromROIs(ImagePlus imp, Collection<? extends Roi> rois, double downsample, Function<qupath.lib.roi.interfaces.ROI, qupath.lib.objects.PathObject> creator, boolean includeMeasurements, qupath.lib.regions.ImagePlane plane) Turn an array of ImageJ ROIs into a list of QuPath PathObjects, optionally adding measurements as well.- Parameters:
imp- the image to use for measurementsrois- the ROIs to convertdownsample- the downsample factor of the imagecreator- the function to create QuPath objects from ROIsincludeMeasurements- request to include measurements for the objects that are createdplane- the image plane for the created objects- Returns:
- Since:
- v0.6.0
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