Class SubcellularDetection

java.lang.Object
qupath.lib.plugins.AbstractPlugin<BufferedImage>
qupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
qupath.imagej.detect.cells.SubcellularDetection
All Implemented Interfaces:
qupath.lib.plugins.PathInteractivePlugin<BufferedImage>, qupath.lib.plugins.PathPlugin<BufferedImage>

public class SubcellularDetection extends qupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
Experimental plugin to help with the quantification of subcellular structures.
  • Constructor Details

    • SubcellularDetection

      public SubcellularDetection()
  • Method Details

    • runPlugin

      public boolean runPlugin(qupath.lib.plugins.TaskRunner taskRunner, qupath.lib.images.ImageData<BufferedImage> imageData, String arg)
      Specified by:
      runPlugin in interface qupath.lib.plugins.PathPlugin<BufferedImage>
      Overrides:
      runPlugin in class qupath.lib.plugins.AbstractPlugin<BufferedImage>
    • addRunnableTasks

      protected void addRunnableTasks(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.objects.PathObject parentObject, List<Runnable> tasks)
      Specified by:
      addRunnableTasks in class qupath.lib.plugins.AbstractPlugin<BufferedImage>
    • getDefaultParameterList

      public qupath.lib.plugins.parameters.ParameterList getDefaultParameterList(qupath.lib.images.ImageData<BufferedImage> imageData)
      Specified by:
      getDefaultParameterList in interface qupath.lib.plugins.PathInteractivePlugin<BufferedImage>
      Specified by:
      getDefaultParameterList in class qupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
    • getName

      public String getName()
    • getLastResultsDescription

      public String getLastResultsDescription()
    • getDescription

      public String getDescription()
    • getParentObjects

      protected Collection<qupath.lib.objects.PathObject> getParentObjects(qupath.lib.images.ImageData<BufferedImage> imageData)
      Specified by:
      getParentObjects in class qupath.lib.plugins.AbstractPlugin<BufferedImage>
    • getSupportedParentObjectClasses

      public Collection<Class<? extends qupath.lib.objects.PathObject>> getSupportedParentObjectClasses()