Package qupath.imagej.detect.cells
Class PositiveCellDetection
java.lang.Object
qupath.lib.plugins.AbstractPlugin<BufferedImage>
qupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
qupath.lib.plugins.AbstractDetectionPlugin<BufferedImage>
qupath.lib.plugins.AbstractTileableDetectionPlugin<BufferedImage>
qupath.imagej.detect.cells.WatershedCellDetection
qupath.imagej.detect.cells.PositiveCellDetection
- All Implemented Interfaces:
qupath.lib.plugins.PathInteractivePlugin<BufferedImage>,qupath.lib.plugins.PathPlugin<BufferedImage>
Alternative implementation of
WatershedCellDetection that automatically applies 1 or 3 intensity thresholds to classify cells.-
Field Summary
Fields inherited from class qupath.imagej.detect.cells.WatershedCellDetection
parametersInitialized -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionprotected qupath.lib.plugins.ObjectDetector<BufferedImage> createDetector(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.plugins.parameters.ParameterList params) Wrap the detector to apply any required classification.qupath.lib.plugins.parameters.ParameterListgetDefaultParameterList(qupath.lib.images.ImageData<BufferedImage> imageData) getName()Methods inherited from class qupath.imagej.detect.cells.WatershedCellDetection
getDebugMode, getDescription, getLastResultsDescription, getPreferredPixelSizeMicrons, getTileOverlap, parseArgument, setDebugModeMethods inherited from class qupath.lib.plugins.AbstractTileableDetectionPlugin
addRunnableTasksMethods inherited from class qupath.lib.plugins.AbstractDetectionPlugin
getParentObjects, getSupportedParentObjectClassesMethods inherited from class qupath.lib.plugins.AbstractInteractivePlugin
alwaysPromptForObjects, getLoggableParameters, getParameterListMethods inherited from class qupath.lib.plugins.AbstractPlugin
addWorkflowStep, getTasks, postprocess, preprocess, rearrangeByStride, requestHierarchyUpdate, runPluginMethods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitMethods inherited from interface qupath.lib.plugins.PathPlugin
runPlugin
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Constructor Details
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PositiveCellDetection
public PositiveCellDetection()Default constructor.
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Method Details
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getDefaultParameterList
public qupath.lib.plugins.parameters.ParameterList getDefaultParameterList(qupath.lib.images.ImageData<BufferedImage> imageData) - Specified by:
getDefaultParameterListin interfacequpath.lib.plugins.PathInteractivePlugin<BufferedImage>- Overrides:
getDefaultParameterListin classWatershedCellDetection
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getName
- Specified by:
getNamein interfacequpath.lib.plugins.PathPlugin<BufferedImage>- Overrides:
getNamein classWatershedCellDetection
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createDetector
protected qupath.lib.plugins.ObjectDetector<BufferedImage> createDetector(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.plugins.parameters.ParameterList params) Wrap the detector to apply any required classification.- Overrides:
createDetectorin classWatershedCellDetection
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