All Classes and Interfaces

Class
Description
QuPath ImageServer that uses the Bio-Formats library to read image data.
A QuPath extension that adds options relating to the BioFormatsImageServer to the main QuPath preference pane.
 
 
 
Builder for ImageServers that make use of the Bio-Formats library.
Container for various options that can customize the behavior of the BioFormatsImageServer.
Allows command line option to convert an input image to OME-TIFF or OME-Zarr.
This class can parse raw bytes into a BufferedImage.
Builder for instances of OMEPixelParser.
Write OME-TIFF files based on QuPath ImageServers.
Builder class to define parameters when exporting an image region as OME-TIFF, possibly as an image pyramid.
Enum representing different ways in which channels may be written to a file.
Preferred compression type when using Bio-Formats.
Class representing a single series to write to an OME-TIFF.
OME TIFF writer command capable of exporting image pyramids based on QuPath ImageServers.
ImageWriter for writing OME-TIFF images.
An ImageWriter for writing OME-zarr files.
Create an OME-Zarr file writer as described by version 0.4 of the specifications of the Next-generation file formats (NGFF).
Builder to create an instance of a OMEZarrWriter.
A GUI command to export the current ImageServer to an OME Zarr directory.