Uses of Class
ij.ImageStack
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Packages that use ImageStack Package Description ij ij.gui ij.plugin ij.plugin.filter ij.process ij.util -
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Uses of ImageStack in ij
Subclasses of ImageStack in ij Modifier and Type Class Description classVirtualStackThis class represents an array of disk-resident images.Methods in ij that return ImageStack Modifier and Type Method Description ImageStackImageStack. convertToFloat()Creates a float version of this stack.static ImageStackImageStack. create(int width, int height, int depth, int bitdepth)Creates a new ImageStack.static ImageStackImageStack. create(ImagePlus[] images)Creates an ImageStack from an ImagePlus array.ImageStackImagePlus. createEmptyStack()Returns an empty image stack that has the same width, height and color table as this image.ImageStackImageStack. crop(int x, int y, int z, int width, int height, int depth)Creates a new stack by cropping this one.ImageStackImageStack. duplicate()Duplicates this stack.ImageStackImagePlus. getImageStack()Returns the base image stack.ImageStackImagePlus. getStack()Returns the image stack.ImageStackVirtualStack. sortDicom(String[] strings, String[] info, int maxDigits)Methods in ij with parameters of type ImageStack Modifier and Type Method Description voidImagePlus. setStack(ImageStack stack)Replaces the image with the specified stack and updates the display.voidImagePlus. setStack(ImageStack newStack, int channels, int slices, int frames)voidImagePlus. setStack(String title, ImageStack newStack)Replaces the image with the specified stack and updates the display.Constructors in ij with parameters of type ImageStack Constructor Description ImagePlus(String title, ImageStack stack)Constructs an ImagePlus from a stack. -
Uses of ImageStack in ij.gui
Subclasses of ImageStack in ij.gui Modifier and Type Class Description classPlotVirtualStackThis is a virtual stack of frozen plots. -
Uses of ImageStack in ij.plugin
Subclasses of ImageStack in ij.plugin Modifier and Type Class Description classAVI_ReaderImageJ Plugin for reading an AVI file into an image stack (one slice per video frame) Restrictions and Notes: - Only few formats supported: - uncompressed 8 bit with palette (=LUT) - uncompressed 8 & 16 bit grayscale - uncompressed 24 & 32 bit RGB (alpha channel ignored) - uncompressed 32 bit AYUV (alpha channel ignored) - various YUV 4:2:2 and 4:2:0 compressed formats (i.e., formats with full luminance resolution, but reduced chroma resolution - png or jpeg-encoded individual frames.classFileInfoVirtualStackThis plugin opens a multi-page TIFF file, or a set of raw images, as a virtual stack.classListVirtualStackThis plugin opens images specified by list of file paths as a virtual stack.Methods in ij.plugin that return ImageStack Modifier and Type Method Description ImageStackStackCombiner. combineHorizontally(ImageStack stack1, ImageStack stack2)ImageStackStackCombiner. combineVertically(ImageStack stack1, ImageStack stack2)ImageStackCanvasResizer. expandStack(ImageStack stackOld, int wNew, int hNew, int xOff, int yOff)static ImageStackFilters3D. filter(ImageStack stackorig, int filter, float vx, float vy, float vz)static ImageStackChannelSplitter. getChannel(ImagePlus imp, int c)Returns, as an ImageStack, the specified channel, where 'c' must be greater than zero and less than or equal to the number of channels in the image.ImageStackAVI_Reader. makeStack(String path, int firstFrame, int lastFrame, boolean isVirtual, boolean convertToGray, boolean flipVertical)Create an ImageStack from an avi file with given path.ImageStackStackMaker. makeStack(ImageProcessor ip, int rows, int columns, int border)ImageStackRGBStackMerge. mergeStacks(int w, int h, int d, ImageStack red, ImageStack green, ImageStack blue, boolean keep)static ImageStackRGBStackMerge. mergeStacks(ImageStack red, ImageStack green, ImageStack blue, boolean keepSource)ImageStackPGM_Reader. openFile(String path)static ImageStack[]ChannelSplitter. splitRGB(ImageStack rgb, boolean keepSource)Splits the specified RGB stack into three 8-bit grayscale stacks.ImageStackStraightener. straightenStack(ImagePlus imp, Roi roi, int width)Methods in ij.plugin with parameters of type ImageStack Modifier and Type Method Description ImageStackStackCombiner. combineHorizontally(ImageStack stack1, ImageStack stack2)ImageStackStackCombiner. combineVertically(ImageStack stack1, ImageStack stack2)ImagePlusRGBStackMerge. createComposite(int w, int h, int d, ImageStack[] stacks, boolean keep)Deprecated; replaced by mergeChannels().ImageStackCanvasResizer. expandStack(ImageStack stackOld, int wNew, int hNew, int xOff, int yOff)static ImageStackFilters3D. filter(ImageStack stackorig, int filter, float vx, float vy, float vz)ImageStackRGBStackMerge. mergeStacks(int w, int h, int d, ImageStack red, ImageStack green, ImageStack blue, boolean keep)static ImageStackRGBStackMerge. mergeStacks(ImageStack red, ImageStack green, ImageStack blue, boolean keepSource)booleanStackReducer. showDialog(ImageStack stack)static ImageStack[]ChannelSplitter. splitRGB(ImageStack rgb, boolean keepSource)Splits the specified RGB stack into three 8-bit grayscale stacks. -
Uses of ImageStack in ij.plugin.filter
Fields in ij.plugin.filter declared as ImageStack Modifier and Type Field Description ImageStackRGBStackSplitter. blueImageStackRGBStackSplitter. greenImageStackRGBStackSplitter. redMethods in ij.plugin.filter with parameters of type ImageStack Modifier and Type Method Description voidRGBStackSplitter. split(ImageStack rgb, boolean keepSource)Deprecated; replaced by ChannelSplitter.splitRGB(). -
Uses of ImageStack in ij.process
Methods in ij.process that return ImageStack Modifier and Type Method Description ImageStackStackProcessor. crop(int x, int y, int width, int height)Crops the stack to the specified rectangle.ImageStackFHT. getComplexTransform()Converts this FHT to a complex Fourier transform and returns it as a two slice stack.ImageStackColorProcessor. getHSB32Stack()Returns an ImageStack with three 32-bit slices, representing hue, saturation and brightnessImageStackColorProcessor. getHSBStack()Returns an ImageStack with three 8-bit slices, representing hue, saturation and brightnessImageStackStackProcessor. resize(int newWidth, int newHeight)Creates a new stack with dimensions 'newWidth' x 'newHeight'.ImageStackStackProcessor. resize(int newWidth, int newHeight, boolean averageWhenDownsizing)ImageStackStackProcessor. rotateLeft()ImageStackStackProcessor. rotateRight()Methods in ij.process with parameters of type ImageStack Modifier and Type Method Description voidStackProcessor. copyBits(ImageStack src, int xloc, int yloc, int mode)voidStackProcessor. filter3D(ImageStack out, float radx, float rady, float radz, int zmin, int zmax, int filter)3D filter using threadsvoidBinaryInterpolator. run(ImageStack stack)Constructors in ij.process with parameters of type ImageStack Constructor Description StackProcessor(ImageStack stack)Constructs a StackProcessor from a stack.StackProcessor(ImageStack stack, ImageProcessor ip)Constructs a StackProcessor from a stack. -
Uses of ImageStack in ij.util
Methods in ij.util that return ImageStack Modifier and Type Method Description static ImageStackDicomTools. sort(ImageStack stack)Sorts a DICOM stack by image number.Methods in ij.util with parameters of type ImageStack Modifier and Type Method Description static doubleDicomTools. getVoxelDepth(ImageStack stack)Calculates the voxel depth of the specified DICOM stack based on the distance between the first and last slices.static ImageStackDicomTools. sort(ImageStack stack)Sorts a DICOM stack by image number.
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