Package qupath.imagej.superpixels
Class DoGSuperpixelsPlugin
java.lang.Object
qupath.lib.plugins.AbstractPlugin<BufferedImage>
qupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
qupath.lib.plugins.AbstractDetectionPlugin<BufferedImage>
qupath.lib.plugins.AbstractTileableDetectionPlugin<BufferedImage>
qupath.imagej.superpixels.DoGSuperpixelsPlugin
- All Implemented Interfaces:
qupath.lib.plugins.PathInteractivePlugin<BufferedImage>,qupath.lib.plugins.PathPlugin<BufferedImage>
public class DoGSuperpixelsPlugin
extends qupath.lib.plugins.AbstractTileableDetectionPlugin<BufferedImage>
A simple superpixel-generating command based upon applying ImageJ's watershed transform to the
absolute values of a Difference-of-Gaussians filtered image.
This provides tile objects that generally correspond to regions containing reasonably similar intensities or textures, which might then be classified.
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Field Summary
Fields inherited from class qupath.lib.plugins.AbstractInteractivePlugin
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionprotected qupath.lib.plugins.ObjectDetector<BufferedImage> createDetector(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.plugins.parameters.ParameterList params) qupath.lib.plugins.parameters.ParameterListgetDefaultParameterList(qupath.lib.images.ImageData<BufferedImage> imageData) getName()protected Collection<? extends qupath.lib.objects.PathObject> getParentObjects(qupath.lib.images.ImageData<BufferedImage> imageData) protected doublegetPreferredPixelSizeMicrons(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.plugins.parameters.ParameterList params) protected intgetTileOverlap(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.plugins.parameters.ParameterList params) Methods inherited from class qupath.lib.plugins.AbstractTileableDetectionPlugin
addRunnableTasksMethods inherited from class qupath.lib.plugins.AbstractDetectionPlugin
getSupportedParentObjectClassesMethods inherited from class qupath.lib.plugins.AbstractInteractivePlugin
alwaysPromptForObjects, getLoggableParameters, getParameterList, parseArgumentMethods inherited from class qupath.lib.plugins.AbstractPlugin
addWorkflowStep, getTasks, postprocess, preprocess, rearrangeByStride, requestHierarchyUpdate, runPluginMethods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitMethods inherited from interface qupath.lib.plugins.PathPlugin
runPlugin
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Constructor Details
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DoGSuperpixelsPlugin
public DoGSuperpixelsPlugin()
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Method Details
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getName
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getLastResultsDescription
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getPreferredPixelSizeMicrons
protected double getPreferredPixelSizeMicrons(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.plugins.parameters.ParameterList params) - Specified by:
getPreferredPixelSizeMicronsin classqupath.lib.plugins.AbstractTileableDetectionPlugin<BufferedImage>
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createDetector
protected qupath.lib.plugins.ObjectDetector<BufferedImage> createDetector(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.plugins.parameters.ParameterList params) - Specified by:
createDetectorin classqupath.lib.plugins.AbstractTileableDetectionPlugin<BufferedImage>
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getTileOverlap
protected int getTileOverlap(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.plugins.parameters.ParameterList params) - Specified by:
getTileOverlapin classqupath.lib.plugins.AbstractTileableDetectionPlugin<BufferedImage>
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getDefaultParameterList
public qupath.lib.plugins.parameters.ParameterList getDefaultParameterList(qupath.lib.images.ImageData<BufferedImage> imageData) - Specified by:
getDefaultParameterListin interfacequpath.lib.plugins.PathInteractivePlugin<BufferedImage>- Specified by:
getDefaultParameterListin classqupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
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getDescription
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getParentObjects
protected Collection<? extends qupath.lib.objects.PathObject> getParentObjects(qupath.lib.images.ImageData<BufferedImage> imageData) - Overrides:
getParentObjectsin classqupath.lib.plugins.AbstractDetectionPlugin<BufferedImage>
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