Class PositivePixelCounterIJ

java.lang.Object
qupath.lib.plugins.AbstractPlugin<BufferedImage>
qupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
qupath.lib.plugins.AbstractDetectionPlugin<BufferedImage>
qupath.imagej.detect.tissue.PositivePixelCounterIJ
All Implemented Interfaces:
qupath.lib.plugins.PathInteractivePlugin<BufferedImage>, qupath.lib.plugins.PathPlugin<BufferedImage>

public class PositivePixelCounterIJ extends qupath.lib.plugins.AbstractDetectionPlugin<BufferedImage>
Simple command to detect regions with positive staining.

For versions <= v0.1.2 this gave simple measurements that were influenced by the downsample values used. Later versions make calibrated measurements and give more flexibility in terms of output.

  • Field Summary

    Fields inherited from class qupath.lib.plugins.AbstractInteractivePlugin

    params
  • Constructor Summary

    Constructors
    Constructor
    Description
     
  • Method Summary

    Modifier and Type
    Method
    Description
    protected void
    addRunnableTasks(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.objects.PathObject parentObject, List<Runnable> tasks)
     
    qupath.lib.plugins.parameters.ParameterList
    getDefaultParameterList(qupath.lib.images.ImageData<BufferedImage> imageData)
     
     
     
     

    Methods inherited from class qupath.lib.plugins.AbstractDetectionPlugin

    getParentObjects, getSupportedParentObjectClasses

    Methods inherited from class qupath.lib.plugins.AbstractInteractivePlugin

    alwaysPromptForObjects, getLoggableParameters, getParameterList, parseArgument

    Methods inherited from class qupath.lib.plugins.AbstractPlugin

    addWorkflowStep, getTasks, postprocess, preprocess, rearrangeByStride, requestHierarchyUpdate, runPlugin

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    Methods inherited from interface qupath.lib.plugins.PathPlugin

    runPlugin
  • Constructor Details

    • PositivePixelCounterIJ

      public PositivePixelCounterIJ()
  • Method Details

    • getDefaultParameterList

      public qupath.lib.plugins.parameters.ParameterList getDefaultParameterList(qupath.lib.images.ImageData<BufferedImage> imageData)
      Specified by:
      getDefaultParameterList in interface qupath.lib.plugins.PathInteractivePlugin<BufferedImage>
      Specified by:
      getDefaultParameterList in class qupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
    • getName

      public String getName()
    • getDescription

      public String getDescription()
    • getLastResultsDescription

      public String getLastResultsDescription()
    • addRunnableTasks

      protected void addRunnableTasks(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.objects.PathObject parentObject, List<Runnable> tasks)
      Specified by:
      addRunnableTasks in class qupath.lib.plugins.AbstractPlugin<BufferedImage>