Index
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form
B
- buildServer(URI, String...) - Method in class qupath.lib.images.servers.openslide.OpenslideServerBuilder
C
- checkImageSupport(URI, String...) - Method in class qupath.lib.images.servers.openslide.OpenslideServerBuilder
- close() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
-
Close; this is important for cleanup.
- close() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
- createID() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
- createServerBuilder() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
D
- detectVendor(String) - Static method in class qupath.lib.images.servers.openslide.jna.OpenSlideLoader
-
Try to detect the vendor of the image at the specified path.
- dispose() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
-
Dispose the OpenSlide object; this is equivalent to
OpenSlide.close(). - dumpMetadata() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
-
Retrieve a JSON string representation of the properties, as stored as key-value pairs by OpenSlide.
G
- getAssociatedImage(String) - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
-
Get a named associated image.
- getAssociatedImage(String) - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
- getAssociatedImageList() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
- getAssociatedImages() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
-
Get a list of all associated image names.
- getDescription() - Method in class qupath.ext.openslide.OpenSlideExtension
- getDescription() - Method in class qupath.lib.images.servers.openslide.OpenslideServerBuilder
- getICCProfileBytes() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
-
Request the bytes for an ICC profile.
- getImageType() - Method in class qupath.lib.images.servers.openslide.OpenslideServerBuilder
- getLevel0Height() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
-
Get the height of the full-resolution image (level 0).
- getLevel0Width() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
-
Get the width of the full-resolution image (level 0).
- getLevelCount() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
-
Get the total number of pyramid levels.
- getLevelHeight(int) - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
-
Get the image height at the specified level.
- getLevelWidth(int) - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
-
Get the image width at the specified level.
- getLibraryVersion() - Static method in class qupath.lib.images.servers.openslide.jna.OpenSlideLoader
-
Get the version of the OpenSlide library.
- getName() - Method in class qupath.ext.openslide.OpenSlideExtension
- getName() - Method in class qupath.lib.images.servers.openslide.OpenslideServerBuilder
- getOriginalMetadata() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
- getProperties() - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
-
Get an unmodifiable map of all available properties.
- getServerType() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
- getURIs() - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
I
- installExtension(QuPathGUI) - Method in class qupath.ext.openslide.OpenSlideExtension
- isOpenSlideAvailable() - Static method in class qupath.lib.images.servers.openslide.jna.OpenSlideLoader
-
Query whether OpenSlide has already been loaded.
M
- matchClassName(String...) - Method in class qupath.lib.images.servers.openslide.OpenslideServerBuilder
O
- openImage(String) - Static method in class qupath.lib.images.servers.openslide.jna.OpenSlideLoader
-
Open an image using OpenSlide, returning an OpenSlide instance to access pixels and metadata.
- OpenSlide - Class in qupath.lib.images.servers.openslide.jna
-
Minimal Java wrapper for OpenSlide.
- openslide_close(long) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_detect_vendor(String) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_get_associated_image_dimensions(long, String, long[], long[]) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_get_associated_image_names(long) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_get_error(long) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_get_icc_profile_size(long) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_get_level_count(long) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_get_level_dimensions(long, int, long[], long[]) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_get_level_downsample(long, int) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_get_property_names(long) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_get_property_value(long, String) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_get_version() - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_open(String) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_read_associated_image(long, String, int[]) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_read_icc_profile(long, byte[]) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- openslide_read_region(long, int[], long, long, int, long, long) - Method in interface qupath.lib.images.servers.openslide.jna.OpenSlideJNA
- OpenSlide.OpenSlideDisposedException - Exception Class in qupath.lib.images.servers.openslide.jna
-
Exception thrown whenever a request is made after the OpenSlide object has been closed.
- OpenSlideDisposedException() - Constructor for exception class qupath.lib.images.servers.openslide.jna.OpenSlide.OpenSlideDisposedException
- OpenSlideExtension - Class in qupath.ext.openslide
- OpenSlideExtension() - Constructor for class qupath.ext.openslide.OpenSlideExtension
- OpenslideImageServer - Class in qupath.lib.images.servers.openslide
-
ImageServer implementation using OpenSlide.
- OpenslideImageServer(URI, String...) - Constructor for class qupath.lib.images.servers.openslide.OpenslideImageServer
-
Create an ImageServer using OpenSlide for the specified file.
- OpenSlideJNA - Interface in qupath.lib.images.servers.openslide.jna
-
JNA interface for OpenSlide.
- OpenSlideLoader - Class in qupath.lib.images.servers.openslide.jna
-
Static helper class to manage loading the OpenSlide library.
- OpenSlideLoader() - Constructor for class qupath.lib.images.servers.openslide.jna.OpenSlideLoader
- openslidePathProperty - Static variable in class qupath.ext.openslide.OpenSlideExtension
- OpenslideServerBuilder - Class in qupath.lib.images.servers.openslide
-
Builder for Openslide ImageServer.
- OpenslideServerBuilder() - Constructor for class qupath.lib.images.servers.openslide.OpenslideServerBuilder
P
- paintRegionARGB(int[], long, long, int, int, int) - Method in class qupath.lib.images.servers.openslide.jna.OpenSlide
- PROPERTY_NAME_BACKGROUND_COLOR - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
- PROPERTY_NAME_BOUNDS_HEIGHT - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
- PROPERTY_NAME_BOUNDS_WIDTH - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
- PROPERTY_NAME_BOUNDS_X - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
- PROPERTY_NAME_BOUNDS_Y - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
- PROPERTY_NAME_COMMENT - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
- PROPERTY_NAME_MPP_X - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
- PROPERTY_NAME_MPP_Y - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
- PROPERTY_NAME_OBJECTIVE_POWER - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
- PROPERTY_NAME_QUICKHASH1 - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
- PROPERTY_NAME_VENDOR - Static variable in class qupath.lib.images.servers.openslide.jna.OpenSlide
Q
- qupath.ext.openslide - package qupath.ext.openslide
- qupath.lib.images.servers.openslide - package qupath.lib.images.servers.openslide
-
Read images using OpenSlide (https://openslide.org/).
- qupath.lib.images.servers.openslide.jna - package qupath.lib.images.servers.openslide.jna
R
- readTile(TileRequest) - Method in class qupath.lib.images.servers.openslide.OpenslideImageServer
T
- tryToLoad(String...) - Static method in class qupath.lib.images.servers.openslide.jna.OpenSlideLoader
-
Try to load OpenSlide.
- tryToLoadQuietly(String...) - Static method in class qupath.lib.images.servers.openslide.jna.OpenSlideLoader
-
Try to load OpenSlide, but don't throw an exception if it fails.
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form