Package qupath.imagej.detect.dearray
Class TMADearrayerPluginIJ
java.lang.Object
qupath.lib.plugins.AbstractPlugin<BufferedImage>
qupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
qupath.imagej.detect.dearray.TMADearrayerPluginIJ
- All Implemented Interfaces:
qupath.lib.plugins.PathInteractivePlugin<BufferedImage>,qupath.lib.plugins.PathPlugin<BufferedImage>
public class TMADearrayerPluginIJ
extends qupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
Plugin for automatically dearraying tissue microarrays (TMAs).
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionprotected voidaddRunnableTasks(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.objects.PathObject parentObject, List<Runnable> tasks) protected voidaddWorkflowStep(qupath.lib.images.ImageData<BufferedImage> imageData, String arg) qupath.lib.plugins.parameters.ParameterListgetDefaultParameterList(qupath.lib.images.ImageData<BufferedImage> imageData) getName()protected Collection<? extends qupath.lib.objects.PathObject> getParentObjects(qupath.lib.images.ImageData<BufferedImage> imageData) Collection<Class<? extends qupath.lib.objects.PathObject>> Methods inherited from class qupath.lib.plugins.AbstractInteractivePlugin
alwaysPromptForObjects, getLoggableParameters, getParameterList, parseArgumentMethods inherited from class qupath.lib.plugins.AbstractPlugin
getTasks, postprocess, preprocess, rearrangeByStride, requestHierarchyUpdate, runPluginMethods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitMethods inherited from interface qupath.lib.plugins.PathPlugin
runPlugin
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Constructor Details
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TMADearrayerPluginIJ
public TMADearrayerPluginIJ()Default constructor.
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Method Details
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getSupportedParentObjectClasses
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addRunnableTasks
protected void addRunnableTasks(qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.objects.PathObject parentObject, List<Runnable> tasks) - Specified by:
addRunnableTasksin classqupath.lib.plugins.AbstractPlugin<BufferedImage>
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getDefaultParameterList
public qupath.lib.plugins.parameters.ParameterList getDefaultParameterList(qupath.lib.images.ImageData<BufferedImage> imageData) - Specified by:
getDefaultParameterListin interfacequpath.lib.plugins.PathInteractivePlugin<BufferedImage>- Specified by:
getDefaultParameterListin classqupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>
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getName
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getLastResultsDescription
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getDescription
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getParentObjects
protected Collection<? extends qupath.lib.objects.PathObject> getParentObjects(qupath.lib.images.ImageData<BufferedImage> imageData) - Specified by:
getParentObjectsin classqupath.lib.plugins.AbstractPlugin<BufferedImage>
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addWorkflowStep
- Overrides:
addWorkflowStepin classqupath.lib.plugins.AbstractPlugin<BufferedImage>
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